• Category Archives Uncategorized
  • The Hummingbird of Pterosaurs.

    Nemicolopterus

    Just announced today in the journal PNAS, is the discovery of the world’s smallest pterosaur. Dubbed: Nemicolopterus crypticus, this little guy had a wingspan of only 10 inches (25.4 cm). I haven’t had a chance to read the paper on it yet, but from the abstract, it appears to be a juvenile. I’d like to know how much larger the authours believe N.crypticus got.

    Either way, this is big news for pterosaur researchers. It means that either:

    • A.) Pterosaurs covered a greater size range than previously thought, or…
    • B.) Pterosaur juveniles lived in different niches than adults.

    Given the reptilian status of pterosaurs, I wouldn’t be surprised if it did turn out to be choice B. The large size discrepancy between adults and hatchlings / juveniles, often results in the formation of two size classes per species. This allows the animals to better exploit their given ecosystems.

    Anyway, we’ll just have to wait for the paper, and see what the results suggest.

    Still, it’s a mighty neat find.

    ~Jura


  • Short blurb

    Today has been pretty boring. Not much to report on, science wise. Scientology wise, it’s another story. Today is the 10th of February, and Anonymous reported on the success of their peaceful protest against Scientology. There are numerous sites online documenting the protests. I particularly like this one from L.A. The “V” masks were a nice (fitting) touch.

    Other than that, I just recently acquired Photoshop and Illustrator CS3, so I’m going to go play with those now.

    ~Jura


  • Owen and Mzee

    Owen and Mzee

    Though their’s is an old story, it’s so unique that I felt it deserved mentioning on my site at least once.Plus it was recently dugg, so I felt a need to respond.

    For those who don’t know the story; back in 2004 during the infamous tsunami disaster, a baby hippo was found stranded on a little piece of land out from the coast of Kenya. The baby hippo, Owen (named after one of the rescuers), was brought to Haller Park near Mombasa. There, the frightened hippo ran from its caretakers and hid by an old, crotchety aldabra tortoise (Geochelone gigantea) named Mzee (MIZ-ZAY). At first, Mzee wanted nothing to do with Owen, but the little (relatively speaking) hippo wouldn’t leave him alone. Eventually he grew to tolerate Owen’s constant harassment.

    Then something wonderous happened. Mzee and Owen became friends. Owen would follow Mzee around everywhere. They would eat together, bathe together, and sleep together. Mzee (the tortoise) invented a way of speaking to Owen. When Mzee wanted to go somewhere, he would gently nibble the tail of Owen. Soon Owen caught on and would do the same, when he wanted to go somewhere. It was an awesome spectacle to behold. This was completely different from what we see with, say, humans and their pet dogs, or cats. It was also different from the agricultural relationship between humans and livestock, or ants and aphids. This was a case of a genuine friendship between two very different animals (separated by over 300 million years of evolution!).

    Owen and Mzee had even developed their own way of talking to each other. They were also very protective. Neither would passively allow a human keeper to get near the other. It was and is one of the most heartwarming, and amazing things to ever be observed in the natural world.

    In 2006, a children’s book was released, documenting the story. Owen and Mzee became world famous, with visitors wanting to see the dynamic duo in person.

    Back in 2007, it was decided that Owen needed to make friends with other hippos. His relationship with Mzee resulted in Owen acting more, and more like a giant tortoise (a hilarious sight to behold). Unfortunately, the friend that they chose for Owen (a female named: Cleo), was too much of a rough houser with the giant tortoises, so they had to separate Owen and Mzee. It’s hard to say if either animal suffered any heartbreak from this separation (I haven’t read any mention of it anywhere). I also don’t know if the two guys are sharing adjacent enclosures, so they might be able to still hang out.

    Nonetheless, the story of Owen and Mzee is one that will live in infamy  for the ages. An amazing case of inter-special friendship between a mammal and a reptile that, prior to this, no one probably ever thought was possible.

    It’s amazing, and it’s all completely documented on their official site: OwenandMzee.com Make sure to watch the documentary. It’s a heartstring puller.

    ~Jura


  • Random stuff

    Not much to talk about herp wise, save a new article in the ABQ Journal regarding the New Mexico debacle. It seems that the investigation is back on track. Hopefully we will see some satisfactory results one way, or the other; from this.

    Since there is not much to add, science wise, I decided to post a link to a show that I think deserves some more attention. While biological science is my passion, technology is my hobby (yeah, I know, it’s completely backwards). To feed that hobby, I used to enjoy the programming of a little network called Tech TV. I enjoyed the network so much, because along with the information presented on how to better use one’s computer, or gadget, the crew of the network talked to one another as if they were friends and family. It gave a real “homey” atmosphere to the entire channel. Watching shows on Tech TV was a lot like visiting a bunch of old friends. Especially since one of the main pushes of the network, was user feedback. E-mails, call ins, and chat messages were all done on air. The show personalities would also appear in the fora to answer questions, or in the chatrooms. Overall, it was a great experience.

    Then Paul Allen sold Tech TV to Comcast’s struggling channel: G4, and the network was gutted from there. That, though, is a long dramatic story that has been told elsewhere time and time again.

    The important thing about all of this, is that Tech TV is back. Better than that, it is back in the environment that spawned it in the first place: The Internet. Shows like: DL.TV, Cranky Geeks, Webb Alert, Command N, and the Revision 3 Network have all brought technology television back to the forefront. Hosts from the now dead Tech TV network, have moved on to become internet celebrities. Podcasts like This Week in Tech and Diggnation have audiences that are much larger than any on the former Tech TV network. The best part is that the same atmosphere of a bunch of geeks just hanging out and having a good time; is still in place.

    Anyway, one of the newest shows released on the Rev 3 network is Internet Superstar with former Unscrewed host: Martin Sargent. In many ways, this is just Unscrewed reborn, but that’s okay. The show features Martin showing off the seedier, weirder and more unsavory parts of internet. It’s always good for a laugh, though it may be traumatizing for those of higher morals.

    For the rest of us, it’s just another form of geek entertainment. Anyway, the show is on it’s second episode. If you find yourself with about 20 minutes of free time, give it a look see.

    ~Jura



  • Study shows shunting in crocs is all about the acid

    Baby _C.palustris_ says:

    Yesterday a new study was released in the journal of Physiological and Biochemical Zoology. Researchers from the University of Utah, studied the effects of the well documented right-to-left shunt in crocodylians.Okay, let’s get the exposition out of the way first.

    Mammals and birds are both characterized by a 4 chambered heart. This heart allows the complete separation of oxygenated and deoxygenated blood streams. Less publicized, but equally as important, this separation also allows for a pressure differential to exist between the two ventricular chambers. That way the right – pulmonary side – of the heart can pump deoxygenated blood at low pressure to the delicate walls of the alveoli in the lungs, while the left – systemic side – of the heart, can pump oxygenated blood at much higher pressure (~7 times higher) to the entire body.

    Reptiles and amphibians differ from mammals and birds, in that they have a heart divided into 3 chambers (two atria, one ventricle). This allows for mixing of oxygenated and deoxygenated blood, which reduces aerobic efficiency.

    Please note the qualifier: aerobic.

    Now, as is often the case with herps, this is a rather broad generalization. The hearts of all reptiles, show various degrees of ventricular separation. Also, for all extant reptiles, there are physiological/haemodynamic mechanisms in place that reduce the amount of blood mixing. Meanwhile, some lizards (e.g. varanids), and snakes (e.g. pythons) have such a large muscular septum near the middle of their ventricle, that it actually completely separates the ventricle during the contractile phase (ventricular systole). Thus making varanids and various snakes, functionally four chambered. These reptiles are capable of producing pressures on their systemic side, that are 7 times higher than the pressures in their pulmonary side. In other words, their functional four chambered hearts allow for pressure differentials that are on par with mammals.

    Then there are the crocodylians. Crocs have the most complicated heart of any vertebrate. They are the only reptiles that have evolved a complete seperation of their ventricles. They are anatomically four chambered. Yet, they also retain the ability to mix their oxygenated and deoxygenated blood supplies. This is accomplished through a small connection between the right and left aortic arches (which come out of each respective ventricle). This connection is referred to as the foramen of Panizza. Making things more interesting still, croc hearts also feature a cog toothed valve that can completely block the flow of blood to the lungs, thus turning their hearts into a double pump systemic circuit.

    </exposition>

    So now we know the how it works, the question we want answered next is: why did it evolve in the first place? The classic “orthodox” explanation has been that all of these traits evolved to allow formerly land dwelling crocodyliformes stay underwater for long periods of time. A four chambered heart is great for aerobic endurance, but pretty darn useless for an animal that spends most of its time holding its breath. In that arena, a three chambered heart is a more efficient system. By mixing oxygenated and deoxygenated blood together, crocodylians and other reptiles are able to siphon as much oxygen as possible from their blood, and thus stay underwater longer.

    As I said, that was the old explanation. Now there is a new one:

    Farmer, C.G., Uriona, T.J., Olsen, D.B., Steenblick, M., Sanders, K. The Right-to-left Shunt of Crocodilians Serves Digestion. Physiological and Biochemical Zoology. Vol. 81(2): 125-137. doi: 10.1086/524150

    Farmer et al studied several groups of juvenile American alligators (Alligator mississippiensis). Each group underwent surgeries of various sorts to measure, and/or block the right to left shunt. The working hypothesis was that crocodylians use their right to left shunt, to serve digestion, by providing a greater reservoir of hydrogen ions (left over from the retention of CO2) for stomach acid secretion. It was suspected that if this was true, then one should see a greater degree of right to left shunting in animals that have just eaten.

    So what did they find?

    Well, for one, they found that juvenile alligators have a preferred postprandial body temperature of ~30?C, and will maintain that temperature to within .03?C. That’s a degree of temperature control worthy of any mammal, or bird.

    Another thing they learned was that alligators that were allowed to stay at that temperature, were a real bugger to keep under control. So they had to drop the temp down 3 degrees, to 27?C instead.

    Farmer et al learned that gastric acid secretion is temperature sensitive. Alligators produced greater quantities of gastric acid at 27?C, than at 19?C.

    Oh yeah, they also learned that crocodylians produced a tonne of acid. At maximum secretion, acid production was an order of magnitude greater than that measured in any mammal, or bird. For those keeping tally at home; that’s 10 times greater.

    The authours final observations warrant some thoughts.

    That the left aorta, which arises from the right – pulmonary – ventricle, is the main blood delivery route for the digestive system. During right to left shunting, oxygenated blood from the left ventricle, gets shoved to the left aorta, and down to the digestive system. That this coincides with increased gastric acid secretion is telling, and strongly suggestive as to the role of the R-L shunt.

    Yet R-L shunting also occurs during dives, and this is still the best explanation for the cog toothed valve. If the crocodylian heart really was specifically developed to increase digestion, then why block the path to the lungs at all? This study shows that the gastrointestinal system benefits from increased oxygen to these tissues. So why block the lungs, if one is trying to keep them oxygenated. Unfortunately the paper doesn’t really mention whether, or not the cog toothed valve was activated during this process. Personally, I don’t remember reading any case of the R-L shunt being used in crocs, without incorporating the cog tooth valve, so…

    I felt that the authours put too much emphasis on endothermy vs. ectothermy. Their final observations involved a blanket statement regarding the R-L shunt in all reptiles. As I mentioned above, crocodylians are unique in their cardiovascular anatomy and physiology. They are also renowned for their very acidic stomach acid. It would seem more parsimonious to say that the R-L shunt in crocodylians, plays a large role in gastric acid secretion for these animals only; and wait for subsequent studies in other reptiles before saying this is true for the whole class.


    Xenomorph
    Okay, so maybe their acid isn’t quite this strong, but you get the point.

    Lastly (I know, I know, this just keeps going), I found it interesting that they studied the effects of gastric acid secretion on the vertebra of a cow. This vert took over 2 weeks to digest! While I can accept that this was partly due to the size of the object, and it’s material (bone is tough, after all.), but 2 weeks! Even at the lower temperature that the experimental group was kept at, it seems hard to believe. The authours gave no mention of gizzard usage in these animals, which suggests that the animals were never given access to gastroliths, which should have sped up the digestive process considerably.

    Either way, the study was interesting. I just think that the authours took their final results a little too far.

    ~ Jura


  • Argh

    No sooner do I update my WordPress version; a new one comes out. Oh well, now that I know how to do it, things should at least go a whole lot faster.

    I’ll probably do the switch tonight so I no longer have to get constantly bugged about needing to update.

    ~Jura

    ————————

    Update: Well, as expected, that went easily. Everything is (once again) up to date.


  • Life in Cold Blood

    Life in Cold Blood

    I just found out that David Attenborough’s latest (and possibly greatest) documentary series: Life in Cold Blood is now out on BBC One.

    I remember talking to a fellow who was working on this series, about 2 years back. At the time, he mentioned that the goal was to portray reptiles doing things no one had ever seen before. It sounded great, and now I’m looking forward to seeing how successful it was in its portrayals.

    Unfortunately, as a citizen of the U.S., I’m going to have to wait until it gets released on DVD here, much like Planet Earth, or Life in the Undergrowth…or Blue Planet: Seas of Life…or…you get the point.

    Damn you BBC. Why do you have to make such enticing programming. >:)

    Anyway, for those in the same boat as me, make sure to visit the official site. It features clips and interesting behind the scenes shots. We might not be able to watch it yet, but we can at least whet our appetites.

    ~ Jura


  • The New Mexico plagiarism debacle.

    Faux NMMNHS bulletin

    To kick off day two of this 30 day romp, I thought it would be pertinent to write about the whole NM aetosaur “who named what, first” drama. For those who haven’t been following what’s been going on; Nature ran a news article a few days ago that brought to light the apparent seedy practices going on at the New Mexico Museum of Natural History and Science. Though Nature’s article only recently brought this to the public’s attention, this practice had been known of and talked about for almost 2 years now.Paleontologist, Mike Taylor, along with grad student Jeff Martz of Texas Tech, and William Parker of Petrified National Forest, Arizona, have found themselves at the heart of a drama they never intended to get in. As documented on his site, the folks at the NMMNHS (in particular: Dr. Spencer Lucas), have apparently been stealing the hard earned work of others, in an effort to pad their own resumes. It has been mentioned (anecdotally) that Dr. Lucas had made a personal goal of publishing more papers than Edward Drinker Cope (who currently holds “the record” at 1200). In my mind, this is an honorable goal to reach for, but if it means cutting corners and releasing work that is either not publish worthy, or outright stolen, then it seems to defeat the purpose. In science, quantity of published work is a distant second to its quality.

    So, did Lucas and company do this on purpose, or was this just a glaring oversight on their part? Were they just being overzealous? To date, that question remains unanswered. Still, it is telling that Lucas and co have yet to respond to Mike, Jeff, Bill, Matt or Darren. The only official response has been from the first (and currently only) mass media mention of this (one has to sit through a quick commercial to read the article). In the article, Lucas denies any wrongdoing.

    Even more disturbing, especially in terms of future ramifications, is the fact that Spencer Lucas is one of the editors on the NMMNHS bulletin; a forum that he uses a lot to publish his findings. In the land of academia, this is a big no no. By submitting official technical papers to a journal that he has some (if not all) content control of, Lucas is able to bypass a portion of the peer review process (basically, the final say on whether or not a paper gets published at all), and pump papers out way faster than average. That isn’t to say that Spencer Lucas and his colleagues at the NMMNHS are using the bulletin for this purpose. This investigation is still in its infancy, so I’m reserving final judgment until then.

    That said, all the accumulated evidence so far (including anecdotal statement from folks who have worked around Dr. Lucas) seems pretty damning. At the very least, it looks to make the NMMNHS bulletin no longer a peer reviewed (and thus respectable) body of work.

    There is not much more that I can add here that hasn’t been documented far better on Mike Taylor’s, or Darren Naish’s respective websites.

    What I will say, is that having spent a fair amount of time in the state of New Mexico, I am not surprised to see that Mike and co. are having as rough a time as they are in trying to seek retribution. New Mexico bureaucrats have a tendency to “protect their own.” If one is a local, or close enough to it (i.e. one has lived their for 10 years, or more, and has established a good reputation with the locals), then one is given free rein to do whatever the heck one feels like, without worry of getting caught. This has allowed many folks to get away with everything from bribing local food inspectors, hiring illegal immigrants, dealing drugs out of the back of the local convenience store and so forth.

    Shaffer Hotel
    The Shaffer Hotel. Once owned by a lady whose blatant mishandling of money resulted in the IRS taking the property away. She was later given a job at one of the local banks!

    It doesn’t help that the state is fairly desperate for attention. Having the chance to boast about having a scientist who has published the most papers of any other scientists in the world, or housing a bulletin that sees the largest growth in published work of any other journal in the country, is just the kind of thing that would cause folks in the political arena to overlook the ethical ramifications, in favour of bragging rights. After all, these are the same people who gave us the Albuquerque Isotopes.

    Finally, I find it disappointing that in a year’s time, aetosaurs, which were these awesome crurotarsan beasts, will now be known mostly for this whole debacle.

    Maybe someone can do a documentary about these guys, to help with their PR.


  • 30 Days

    30 Days

    Okay, so I originally intended this to start on February 1st, but I wanted to get WordPress updated first. Having surfed internet, and dealt with web design for over a decade now, I’ve had the opportunity to watch as fads come and go. I’ve also had the chance to see exactly what it is that creates a following. In the case of blogs, webcomics and podcasts, content may be key, but consistency is just as important. One can have the most amazing blog in the world, but if it is only updated once a year, then there won’t be much of a following behind it.This brings me to my site. The rate at which I’m putting up new content is just this shy of pathetic (I do have many more reptile pages in the works, I’m just short of pictures, design and time). The blog/what’s new is doing pretty well though. Last week I decided that one thing I could do to help the site, would be to post more often. The problem I have is that, contrary to what the length of these contributions would assume, I really don’t have much to talk about. This makes it hard for me to want to log on and make a post.In other words it’s writer’s block.

    So I thought that the best way for me to overcome this writer’s block and get this blog really up and running, is if I presented a challenge to myself. In this case, the challenge is simple:

    “Spend 30 days writing at least one post per day.”

    So I’m going to give it a shot. From today, the 3rd of February, to 3rd March, I will be posting something new every day. It might be a short “meh” post, or a series of titanic rants about Cheetos, or something. Either way, there will be at least one new thing here during this time span. Hopefully by the end of the run, I will have gotten used to daily writing, and this whole blogging idea will become a little more palatable for me.

    So stay tuned. There’s more to come.

    ~Jura


  • WordPress update

    I finally got around to updating WordPress to the latest version. It was a little nail-biting at first. I followed the upgrade steps meticulously. After a couple of steps, though, I realized that this is actually pretty stupid easy. The entire process took about 10 minutes (most of that was waiting for things to delete, or upload).

    As is typical, not much has changed on the outset. The backroom is nicer though. It’s easier to add tags, and there is now a tab that lets me switch between the visual layout, and the more useful code layout (very helpful for removing the bloat code that wordpress likes to stick in all the posts).

    Anyway, there you go. Just a minor update to the site, and mostly for my benefit.

    ~Jura