• Amazing acrobatic geckos


    wall runner

    High speed pictures of Cosymbotus platyurus running up a vertical surface

    I don’t know why, but for some reason herp news stories always seem to come in twos.

    Announced today (or yesterday by the time I get this posted), scientists at UC Berkeley have found geckos to be one of the most agile climbing animals ever studied.

    Jusufi, A., Goldman, D.I., Revzen, S. and Full, R.J. 2008. Active tails enhance arboreal acrobatics in geckos. PNAS. Vol. 105: 4215-4219.

    Goldman et al studied geckos of the species Cosymbotus platyurus. Lizards were ran on vertical surfaces that had various degrees of traction. To induce slippage, some of the surfaces were equipped with a section of dry erase board which had been covered with dry erase ink.

    Apparently geckos can’t grab onto everything after all.

    By placing the lizards at various sections of these surfaces, the researchers were able to get them to either slightly slip, almost fall, or completely.

    The results were interesting.

    For starters, lizards ran up the surfaces with their tails off the “ground” the entire time. That is, unless they slipped. Immediately upon slipping, the tail would come down and act as a brace to keep the body from tilting back and falling off. The most dramatic case of this came from an experiment in which the researchers had dropped the lizards down straight on the dry erase board. The gecko in question fell backward, caught itself with its hindlegs, and tail. The body fell away from the wall about 60? before the tail fully caught the animal, and it was able to right itself again (see photo above).
    self righting gecko
    By far the neatest test performed involved getting the lizards and placing them in a supine (belly up) position on a light polyethylene foil held together with four fishing lines. Then by gently shaking the platform (or waiting for the lizards to slip), they were able to dislodge the geckos and send them plummeting to their doom.

    Doom, in this case, being an embellishment for safely padded landing area.

    The lizards fell 2 meters down. High speed cameras recorded the first 23cm of that trip. These little guys were able to go from fully upside down to rightside up in only 106 milliseconds.

    Let me make sure I’m getting the full effect of that result across:

    These geckos were able to reorient themselves in 106 THOUSANDTHS of a second, or .00106 seconds!!

    Geckos now hold the record for fasting righting time of a vertebrate without the aid of wings.

    This unique feat is accomplished by rotating the substantial tail on these animals. As they fall, the tail is rotated counterclockwise. Physics does the rest. Conservation of angular momentum takes over and the entire body winds up turning clockwise, thus reorienting the animal. This phenomenon is known as: air righting with zero angular momentum. It’s the same effect that cats are often lauded for.

    Cats, and other air righting mammals (e.g. rats) accomplish their air righting maneuvers by flexing and twisting their backs. Evolution removed the need/use for a large powerful tail in mammals, hundreds of millions of years ago.

    No so with lizards. Thanks to this “fifth appendage” all the geckos needed to do was use their tail like a little propeller. There is, however, a caveat.

    Cosymbotus platyurus, like most geckos, is capable of caudal autotomy (i.e. voluntary tail loss). Would lizards that have lost their tails still be able to right themselves?

    Jusufi et al tested this scenario too. They carefully elicited the loss of the tails in some of their experimental animals, and then subjected them to the same tests as before. The results were striking. Tailless lizards were unable to keep themselves from falling in the vertical slip tests. When they were dropped supine, they still righted themselves, but the rate at which they did it was much slower. Tailless geckos relied on the kind of back flexion and twisting seen in mammals.

    Taking things one step further, the authours decided to see how much of a role the tail plays during free fall. They placed the lizards in vertically oriented wind tunnels and “set them free.” The results were unequivocal; the tail acts as the main rudder in these guys. Geckos would rotate their tails counterclockwise to turn left, and clockwise to turn right, while the body remained a stationary airfoil.

    The overall results demonstrated the incredible importance of tails in geckos. This is interesting given that so many geckos are also willing to part with their tails when in danger.

    It seems that in the natural world it’s better to risk knocking oneself out from a fall, than to risk getting eaten by a bodypart that stubbornly stays on.
    It’s unfortunate that the researchers didn’t test the air-righting ability of these geckos after their tails had grown back. Judging from the videos it appears that all the work is being generated by the proximal tail muscles; which stay even after autotomy. Theoretically then, it should still work in a regrown tail.

    Oh yeah, did I forget to mention, Jusufi et al not only recorded everything, but they made them available for everyone to watch.

    They’re all worth watching. It’s cool to see just how fast these little geckos are.

    And so the “slow, sluggish reptile” stereotype, receives yet another nail in its coffin.

    ~Jura


  • Bow down to the warrior croc _Guarinisuchus munizi_

    Recently published in Proceedings of the Royal Society B, scientists in Brazil have found the remains of a prehistoric crocodyliforme that used to roam the oceans of the Paleocene.

    The critter has been given the name: Guarinisuchus munizi, which translates out to: Muniz’s warrior crocodile. Despite the “crocodile” in its name, G.munizi was not that closely related to true crocodylians. It was more closely related to the giant pholidosaur Sarcosuchus imperator.

    Guarinisuchus muniziSarcosuchus


    Close relative of Guarinisuchus munizi [left] was Sarcosuchus imperator [right]. Not true crocodiles.

    The neat thing about the paper, was not so much the crocodyliforme itself. At 3 meters, G.munizi was small for a dyrosaurid. Rather, it is the implications of this find that are intriguing.

    Dyrosaurids first appeared in the Late Cretaceous Period (Maastrichtian age) . During this time they were very scarce, and hard to find. They were shallow marine predators, and in the Cretaceous that niche was already filled by another group of animals: the mosasaurs.

    These ancient sea lizards had one of the fastest diversification rates of any vertebrate group studied. They went from nothing to dozens of species with a cosmopolitan distribution and domination of many ecological niches. All of this occurred in the space of only 25 million years! That’s faster than mammal diversification, and faster than dinosaur diversification.

    Mosasaurs were showing no signs of slowing down right up to the K/T asteroid event. After that, they disappeared.

    That’s when the dyrosaurids started taking over.

    Analysis of Guarinisuchus munizi material has found that it is more closely related to African taxa than its geographically closer relatives in North America. This suggests that dyrosaurids had crossed the Atlantic ocean from Africa sometime before the K/T event. After said event, the vacant niches left by the mosasaurs were quickly snatched up by these dyrosaurids, as they moved up North, and eventually, worldwide.

    It is interesting to see how this group of animals was apparently held back during their earlier evolution. Yet, if they hadn’t been held back; if they had out-competed mosasaurs for the top spot in the food chain, then they wouldn’t have survived the K/T event.

    It’s funny – and completely make believe – but it almost appears as if dyrosaurids were already setting themselves up to take over. It’s almost as if they knew…

    They didn’t of course, but it’s fun to pretend that they did. >:)

    ~Jura


  • Site update

    So I’ve been working on dragging the rest of my site into the 21st century. While most of this work has been just transcribing of old code to new code, I didn’t want to just wind up rehashing all of my old info.

    I mean there are only so many ways that one can remix the same stuff.

    As the meat of the site was meant to contain species information, I thought it would be nice if my first revamped species page, was a new one.

    So I went and made one.

    I had been meaning to write about Chlamydosaurus kingii (i.e. the frilled lizard) for a long time now. They have been a lacertilian favourite of mine. It’s rather sad that there is not much written about these guys, save for the occasional herpetocultural article, or the rather glib Wikipedia article.

    Now, while I could have just gone and updated Wikipedia with this info, I wanted to have it on my site first. I mean, if I’m going to be the person to flesh out this species, then it’s only fair that I give my site first dibs.

    Much of the article was culled from data in Shine & Lambeck, 1989. This was, and still is the most comprehensive review of this species. It is interesting to note that this reference is used in the Wikipedia article, but not for any of the more interesting info.

    For example, as can be read in the article, frilled lizards are unique in being the only extant reptile that is an obligate biped. You’d think that would get more attention. Hmmph, it must be that distracting frill. 🙂

    There you go. A new update with actual new content.

    This might just become a pattern. 🙂

    ~Jura


  • Bloody slow.

    It has been a painfully slow week in terms of herpetology and paleo. I’ve noticed that when I tend to talk about things being slow, there is usually a sudden surge in topics. Here’s hoping that will happen this time too.

    Until then, let’s all congratulate Chrysemys picta bellii for becoming Colorado’s official state reptile.

    More soon (hopefully)

    ~Jura


  • Update on Gharial plight.

    Astute observers may remember the news story about the mysterious death of gharials in the Yamuna river.

    A recent report by the National Geographic Society suggests the the culprit is the food being fed to these animals.

    They suggested that as the fish moved from polluted rivers into the Chambal, they ingested chemicals in their tissues. When the gharials eat the fish, these harmful substances pass into their systems.

    One of the international vets who has been working on the case, Paolo Martelli, explained to the publication: “When cold temperatures came, the uric acid precipitated [separated into a fine suspension of solid particles] and began causing problems.

    “So winter coupled with excess food could have made the gharials more susceptible to the toxin.”

    One step closer, and none too soon either. 110 animals have died from this poisoning. Given that the wild population is estimated at 200, or less individuals this was a setback that these animals could not afford.


  • Alligators can shift their lungs and lizard ecology determines movement.

    There were two new papers released today in the Journal of Experimental Biology.

    The first one is the biggest, as it received a news story.


    Uriona, T.J., and Farmer, C.G. 2008. Recruitment of the diaphragmaticus, ischiopubis and other respiratory muscles to control pitch and roll in the American alligator (Alligator mississippiensis). J. Exp. Biol. Vol. 211: 1141-1147 doi: 10.1242/jeb.015339

    Abstract

    We used electromyography on juvenile American alligators to test the hypothesis that the following muscles, which are known to play a role in respiration, are recruited for aquatic locomotion: M. diaphragmaticus, M. ischiopubis, M. rectus abdominis, M. intercostalis internus, and the M. transversus abdominis. We found no activity with locomotion in the transversus. The diaphragmaticus, ischiopubis, rectus abdominis and internal intercostals were active when the animals executed a head-down dive from a horizontal posture. Weights attached to the base of the tail resulted in greater electrical activity of diaphragmaticus, ischiopubis and rectus muscles than when weights were attached to the head, supporting a role of this musculature in locomotion. The diaphragmaticus and rectus abdominis were active unilaterally with rolling maneuvers. Although the function of these muscles in locomotion has previously been unrecognized, these data raise the possibility that the locomotor function arose when Crocodylomorpha assumed a semi-aquatic existence and that the musculoskeletal complex was secondarily recruited to supplement ventilation.

    Scientists at the University of Utah have discovered the unique internal subtleties that allow crocodylians to sink, rise, pitch and roll; all without disturbing the water (much). It turns out that the main muscles used for breathing, are also used to actually shift the lungs within the body!

    That’s just crazy awesome. Uriona & Farmer’s work raises the question of how prevalent this ability is in other semi-aquatic animals (e.g. seals, terrapins, manatees). By shifting the lungs further back in the body, crocodylians are able to change their local density. This allows the front, or back of the animal to rise and sink separately from the rest of the body. So too does moving the lungs from side to side allow for rolling in the water. All of this can occur without the need to move any external body parts. This means no extra turbulence gets created in the water, thus allowing crocodylians to better sneak up on their fishy, or fleshy prey.




    Baby crocodiles exhibiting their unique pulmonary powers.

    If anything, it sure speaks to why crocodyliformes have held dominion over the semi-aquatic niche for over 200 million years. Uriona and Farmer do suggest that the ability of these respiratory muscles to do this might not be an exaptation. Rather, this might have been the initial impetus behind the evolution of these muscles. Only later would they have been exapted to help with breathing on land. Though the authours provide some good parsimonious reasons for why this may be (basically it would take less evolutionary steps to accomplish than the other way around), it doesn’t really jive with the fossil evidence. Part of the reason why the crocodylian diaphragm works, is because the pubis (the forepart of the hip bone in most animals, and the part that juts out so prominently in theropod dinosaurs), is mobile. This mobility occurred early on in crocodyliforme evolution, with the crocodylomorph Protosuchus having a pubis that was almost mobile. The problem arises when one looks at this early crocodylomorph. Protosuchus was obviously terrestrial. If Protosuchus was evolving a mobile pubis already, then it was doubtful that it was being used to allow lung shifting in the body (an ability that is helpful when underwater, but pretty pointless on land). Furthermore, Crocodylia proper is the umpteenth time that crocodyliformes have returned to a semi-aquatic existence. It is doubtful that all the numerous land outings that occurred during crocodyliforme evolution, would have retained the ability to move the lungs to and fro. It seems far more likely that this was an ability that evolved in Crocodylia, or somewhere close by on the evolutionary tree, in some taxa that was still semi-aquatic.


    Protosuchus

    Protosuchus richardsoni. An example of an early crocodylomorph.

    Of course it is also possible that crocodyliforme phylogeny is just all f-ed up. With the amount of convergence rampant in that lot, this remains a distinct possibility.

    Either way this is a cool discovery, and one worthy of adding to the crocodylian pages.

    The second paper also comes from the Journal of Experimental Biology. This one involves lizards.


    McElroy, E.J., Hickey, K.L., Reilly, S.M. 2008. The correlated evolution of biomechanics, gait and foraging mode in lizards. J. Exp. Biol. Vol. 211: 1029-1040. doi: 10.1242/jeb.015503

    Abstract

    Foraging mode has molded the evolution of many aspects of lizard biology. From a basic sit-and-wait sprinting feeding strategy, several lizard groups have evolved a wide foraging strategy, slowly moving through the environment using their highly developed chemosensory systems to locate prey. We studied locomotor performance, whole-body mechanics and gaits in a phylogenetic array of lizards that use sit-and-wait and wide-foraging strategies to contrast the functional differences associated with the need for speed vs slow continuous movement during foraging. Using multivariate and phylogenetic comparative analyses we tested for patterns of covariation in gaits and locomotor mechanics in relation to foraging mode. Sit-and-wait species used only fast speeds and trotting gaits coupled with running (bouncing) mechanics. Different wide-foraging species independently evolved slower locomotion with walking (vaulting) mechanics coupled with several different walking gaits, some of which have evolved several times. Most wide foragers retain the running mechanics with trotting gaits observed in sit-and-wait lizards, but some wide foragers have evolved very slow (high duty factor) running mechanics. In addition, three evolutionary reversals back to sit-and-wait foraging are coupled with the loss of walking mechanics. These findings provide strong evidence that foraging mode drives the evolution of biomechanics and gaits in lizards and that there are several ways to evolve slower locomotion. In addition, the different gaits used to walk slowly appear to match the ecological and behavioral challenges of the species that use them. Trotting appears to be a functionally stable strategy in lizards not necessarily related to whole-body mechanics or speed.

    I haven’t had a chance to read much more than what was written already. I do take a bit of offense to the authours referring to scleroglossan foraging technique as “slow,” but what are you going to do?

    I do find it interesting that lizards seem to have lost the ability to “walk” numerous times. That almost seems bizarre. The study points out that ecology produces heavy pressures on lizards in terms of their locomotion type. This is extremely pertinent given how often one hears the old (and wrong!) adage about “reptiles” being incapable of intense aerobic activity.

    According to the above study (among others), it all depends on the animals being tested.

    There we go. Two really cool papers on reptiles, being released in one day.

    ~Jura

    Yes, I know. I used jive. I’m sorry.


  • Dr. Randy Pausch October 1960 – …

    Awhile back I wrote a post about the importance of being a dream chaser. Now, I admit that the timing of the post did coincide with a part of the year that I find personally repulsive. As such, the tone came out rather dreary and whiny. I try not to bitch about things like this because every time I do, I seem to get reminded of people in far worse situations than I.

    I like to think that these “lessons in humility” help to keep me in my place.

    I have since come across a lecture that gives a message very similar to what I wrote, but in a far more articulate and powerful manner.

    Judging from the amount of diggs this lecture has gotten, I’m thinking that I’m really just joining the choir. Nonetheless, if you are one of the few folks (like myself) who hadn’t yet seen this, I recommend watching the final lecture by professor Randy Pausch Ph.D.

    Dr. Pausch is dying of pancreatic cancer. At the time of his final lecture, he had six months left to live. We’re on month six now, and Dr. Pausch is still with us. One can keep track on how well he is doing by heading to his official site.

    In his final lecture, Dr. Pausch went over what it takes to achieve one’s dreams, and the importance of living an honourable life. His speech has been so moving and inspirational that it has been watched by over 6 million people across the world. Dr. Pausch really shows how perseverance, determination, and honour, can result in one achieving the dreams of childhood.

    If one hasn’t seen it yet, I highly recommend watching his final lecture. There are two main versions to choose from.

    1.) The original Carnegie Mellon lecture (runtime: 76:26)

    2.) The abridged, but no less powerful version for Oprah (runtime: 11:32)

    I recommend the longer one, simply because it is the most in-depth, and is (of course) the original. When it comes to things like these, I always feel that the first time is always the best time.

    I would have been proud to have him as a teacher.

    Randy Pausch is one of my heroes.

    Please watch his lecture and see for yourself.

    ~Jura


  • Jeff Martz’s response.

    Just a quick update for folks who don’t already know. Jeff Martz has responded to Spencer Lucas’s statements regarding the whole aetogate matter.

    He also provides the necessary figures needed to understand the relevance of the case.

    That’s if for now.

    Back to transcoding.

    ~Jura


  • Site revamps and more on Aetogate.

    Visitors last night might have noticed the status of the front page got kinda screwy last night. I was attempting to meld my old Java applet menu, with the current menu. As is evident by today, I had no luck. So I’m still looking into fixing that. I’ve also been working on dragging the rest of my site into the 21st century, by making some simple, but useful CSS and PHP templates. Everything seems to be working out pretty well (though it sure takes a lot of time to sift through).

    So far, I only have one page on my site using the template. Each page needs to be converted over, which means I have to make sure all the old code gets changed over. In the process I’m making sure everything stays XHTML compliant. For some pages, it’s easy. For others, eh, not so much. Feel free to leave an feedback on the new design (I already know that there is a format issue with screens running a 1024×768 resolution. I’m working on fixing that).

    On the Aetogate front, Bill Parker and Jeff Martz have both provided comments to the DCA’s results and Lucas’s response(pdf). I can only link to Bill Parker’s response right now (I can’t find Jeff’s). It’s definitely worth reading. Parker provides plenty of supporting documentation to back up his claims and help remove the “he said. she said” stuff that was going on in Lucas’s response.

    When I find Dr. Martz’s response, I’ll link to it here.

    ~Jura


  • Norell sets the record straight.

    As I’ve mentioned here before, the fact that defendants of Lucas and co. have insisted that the NMMNHS bulletin follows the same criteria for publication that other in house publications do, has me worried about the validity of these other publications. In particular, the AMNH Novitates and Bulletin series.

    Three days ago, Mark Norell, curator at the AMNH, sent correspondence to DCA chair Stuart Ashman, setting the record straight on the publishing practices at the American Museum of Natural History.

    Needless to say, my worries were unnecessary and my skepticism regarding the statements of Norman Silberling, and others, regarding publication practices of the NMMNHS bulletin, was well founded.

    Head on over to Mike Taylor’s site, and give it a read, yourself.

    ~Jura