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  • T-U-R-T-L-E Power! Part 1: Turtles are Weird.


    As the meme goes: I like turtles!

    They are such a unique group of animals, that one can’t help but be drawn to them. Yet despite their uniqueness, turtles tend to get thrown into the wastebin of “living fossils”. It’s not uncommon to hear documentaries, or books refer to turtles as having been static since their first appearance 200+ million years ago. It’s unfortunate because statements like these tend to downplay just how weird and wonderful turtles really are.

    So why are turtles so weird? Well, as one might expect, it’s all about the shell. The turtle shell is an iconic image. Everyone knows what a turtle basically looks like. Even strange turtles like the mata mata (Chelus fimbriatus) are still recognizable as turtles. Contrary to popular belief, turtles can neither come out of their shells, nor does the shell act as their home. One cannot pull a turtle from its shell. The shell is the result of a phenomenal transformation of the backbone, ribcage, sternum, clavicles and gastralia.

    Turtle shells are different from the armoured “shells” seen on dinosaurs like the ankylosaurs. It is also fundamentally different from the armour seen on armadillos, crocodylians and every other vertebrate out there. In all these other animals, the armour is composed of bony plates that are formed from bone which is made intramembranously in the dermal portions of the body. Turtles are the only animals we know of that develop their armour by using this dermal bone in conjunction with endochondral bones (i.e.. the vertebrae and rib cage).

    turtle_side_view1
    A turtle “coming out of its shell.” Image from the Encarta website.

    It is at this point that turtles go from simply being unique, to just being weird. In order for the shell to protect the exposed limbs and head, the shell had to engulf the limb girdles. The rib cage had to actually grow over the pectoral and pelvic girdles. Think about that for a minute. Take a look in the mirror sometime and see how your arms are placed. Our arms, and the arms of every other tetrapod alive today, are set outside the rib cage. In fact, we actually can (and do) rest our arms along the outside of our ribs. Turtles can’t do that. Having one’s ribs on the outside can really hamper the ability to move the arms. The arms can extend, but they cannot bend without banging into the ribs. In order to fix this, turtles had to reverse the way their arms bend. Turtle arms bend towards one another, rather than away as they do in all other tetrapods. Imagine if your arms bent like your legs do, and you get the idea. Protection of the head required another unique innovation. Namely, turtles had to become double jointed. Turtle neck articulation follows a standard “ball and socket” arrangement that is widespread among various extant reptiles. However, within each species there is between one and two vertebrae that feature a “ball” on both sides (Romer, 1956). This biconcavity creates a hinge joint that can bend a full 90°. It is this special joint, more than anything else, that allows turtles to contort their necks in such a manner. For pleurodires, as the name implies, this articulation allows the neck to be tucked to the side of the body under a lip of the carapace. For cryptodires, these double joints allow the head and neck to literally go inside the body cavity; something no other tetrapod can do, and something that is decidedly weird. 🙂 Another issue with having a shell composed of fused ribs and vertebrae, is that flexibility is reduced to zero. This has a huge effect on speed. Turtles cannot extend their stride by bending their spine; a behaviour that all other tetrapods are capable of . The only way to increase stride length is to increase the lengths of the limbs. This puts an immediate limit on turtle speed. While longer limbs could be evolved, they would not be able to fit inside the shell. The only way for a turtle to go faster is to speed up the stride frequency. Turtles were thus forced to give up on ever being speedy. Though there are some chelonian members (e.g. my Terrapene ornata luteola) which put that statement to the test.

    Yet another weird characteristic of turtles is how they have circumvented the issue of breathing while encased in armour.

    Normally, in tetrapods, breathing is achieved through the bellow like pumping of the lungs. This is accomplished by muscles connected to the ribs. These muscles expand the ribcage, allowing air to enter. As turtles no longer had the joints that allow the ribs to move, they lost the muscles that moved them. This creates a problem unique to turtles. How does one get air both in, and out of the body cavity. This is a problem that seems to have been solved multiple times in turtle evolution. Tortoises can “rock” their pectoral girdles back and forth in order to pump the lungs. Many semi-aquatic turtles can use the buoyancy of water to push air out of their lungs, while others can use the weight of their viscera to pull down on the lungs and allow air in. Many, though, have evolved sheets of muscle connected to the lungs, which will either expand, or contract the lungs and allow for respiration. Some, such as box turtles (Terrapene) require a sheets of muscle that will both expand and contract the lungs. In these animals, both inhalation and exhalation, are an energetic process. The upshot to this, is that by having independent muscles for respiration, box turtles are able to breathe even when fully sealed inside their shells (Landberg et al, 2003).

    One strange aspect of chelonians that is rarely brought up, is how incredibly diversified they are. If turtles had died out at the end of the Mesozoic, and all we had to go on were fossils, I doubt we would ever have realized just how “flexible” the turtle bodyplan actually is.

    Despite being encased in a shell both above and below, turtles are capable of chasing down prey (e.g. Trionyx and Apalone). Some are adept excavators; making extensive burrows that can run as long as 9 meters (30ft) and be 3.6m (12ft) deep (Gopherus agassizii). Still others like pancake tortoises (Malacochersis tornieri) are proficient rock climbers. Probably most surprising are musk turtles (Sternotherus). These normally waterbound turtles are quite adept tree climbers. Sternotherus minor has been observed scaling cypress trees up to 2 meters (Orenstein, 2001). Both of these species have relatively small plastrons which give them added flexibility. Still, even stiffened tanks like Leopard tortoises (Geochelone pardalis ) have been observed scaling fences that were blocking their way. The animals would climb up one side and then just topple over the other (Orenstein, 2001).


    Some, such as the big-headed turtle (Platysternon megacephalum) have evolved huge heads with strong jaws for crushing shellfish. Others are efficient filter feeders (Podocnemis unifilis); sieving the water of small food particles.

    Many freshwater turtle species have re-evolved ?gills.? These are areas of thin, permeable skin usually around their cloaca. This allows these species to take in oxygen through the water.

    Lastly, turtles don’t grow old (Congdon, 1992). Unlike most other animals, turtles show little to no signs of age related deterioration. 74 year old three toed box turtles (Terrapene carolina triunguis) were found to be just as reproductively active as turtles some 40 years younger than them. (Miller, 2001).

    So chelonians are weird, but how did they come to be this way? For that, you’ll have to stay tuned.

    ~Jura

    Extra geek points to folks who got the reference to the Partners in Kryme song from the first TMNT movie. Id est: the original turtle rap. None of that Vanilla Ice crap.


    References

    Congdon, J. 1992. Senescence in Turtles: Evidence from Three Decades of Study on the E. S. George Reserve. Senescence in Organisms in Natural Populations. American Association of Gerontologists. Washington, D.C.

    Landberg, T., Mailhot, J.D., Brainerd, E.L. 2003. Lung Ventilation During Treadmill Locomotion in a Terrestrial Turtle, Terrapene carolina. J.Exp.Biol. Vol. 206: 3391-3404.

    Miller, J.K. 2001. Escaping Senescence: Demographic Data from the Three-Toed Box Turtle (Terrapene carolina triunguis).

    Orenstein, R. 2001. Turtles, Tortoises and Terrapins: Survivors in Armor. Firefly Books. 304 pps. ISBN 1-55209-605-X

    Romer, A.S. 1956. Osteology of the Reptiles. U.Chicago Press. ISBN: 0-89464-985-x 772pps


  • Back into the groove.

    Things have been pretty slow here over the past 2 months. Much of that had to do with things being remarkably busy IRL. I’ve also noticed that while the posting rate had dried up around here, my hit count has been steadily increasing.

    Just more proof that life lives off irony. >:)

    Anyway, now that things have slowed a tick, I’m going to be revving up the old blog once more. I should have something interesting to start the new year off later today.

    More to come.

    ~Jura


  • Arctic dinosaurs special on NOVA

    Photo from Smithsonianmag.com
    Photo from Smithsonianmag.com

    Given all the recent stink over a certain other documentary, I’m not exactly itching to jump back into dino docs.

    Oh well.

    The Public Broadcasting Service’s long running series NOVA, has a new episode out, entitled Arctic Dinosaurs. The episode is about a particularly exciting find in Alaska, and its implications for our view on dinosaurs. The researchers; namely museum Victoria’s Tom Rich and MNS Dallas’ Anthony Fiorillo, came across a fossil bed along Alaska’s north slope, that revealed the existence of hadrosaurs, ceratopians and coelurosaur theropods, all living in far North Alaska.

    As I had mentioned previously, NOVA tends to get lauded for its well put together documentaries. I would argue that this doc was no different; though there were some missteps that I feel may be a sign of NOVA’s producers trying to fall more in line with the fare seen on Discovery Channel and the A&E networks.

    First, and foremost, I would like to applaud PBS for making this NOVA special available online.

    Secondly, I would like to lambast PBS for what is probably their most egregious error with this, and other NOVA specials. Namely the lack of Firefox love. The only way I am able to watch these NOVA specials is by firing up Internet Explorer. If I use Firefox all that happens is I get a dead loading screen.

    The premise of the series is fine, and as in previous iterations, NOVA has done a good job of letting the scientists talk how scientists really talk (i.e. with lots of caution and caveats).

    I was far less impressed with the writing for the narrator. There were more than a few instances where the narrator resorted to straight up hyperbole. Especially in the beginning when it is revealed that all these dinosaur fossils had been found in this polar state.

    The narrator said:

    The startling discovery that these ancient reptiles, “thunder lizards,” lived and thrived in the arctic has taken scientists by surprise.

    Then a little later:

    According to conventional wisdom, it shouldn’t be here, because this is how dinosaurs are typically pictured: cold-blooded reptiles living in tropical climes, not in cold, arctic environments like this one. And the Hadrosaur is not alone.

    Um, no. We have had discoveries of dinosaurs, and other reptiles from polar and paleo-polar latitudes, for decades now. The real neat thing about this find, was the sheer number of animals discovered. This doc served more as a review of what we have learned so far, rather than a breaking news story.

    There was another writing snafu that occurred a little further in too that I feel needs clarifying:

    Scientists long believed that dinosaur biology resembled that of cold-blooded reptiles like crocodiles, animals that require warmth to survive and cannot withstand prolonged exposure to temperatures below freezing. But not one crocodile fossil has been found along the Colville, which suggests that polar dinosaurs found a way to adapt to an environment that their cold-blooded cousins couldn’t tolerate. But how?

    This statement is misleading. We do have evidence of non-dinosaurian polar reptiles. These include Cretaceous crocodylian and turtle fossils found in Victoria, Australia (which would have been closer to the South Pole) and Axel Heiberg Island in Canada, as well as plesiosaur fossils from Antarctica, and at least the assumption that Meiolaniid turtles (large, ankylosaur like armoured turtles that lived from the late Cretaceous through to the Pleistocene) had once lived in Antarctica.

    Oh, and also Leaellynasaura amicagraphica was a herbivore; not a carnivore as was stated in the show.

    So there were those few writing missteps. The only other thing I can fault the show for was its very lackluster CG work. As NOVA is a mostly public funded series, I can forgive the lower quality CG work, though I still think they could have afforded to make their models at least a tad more realistic (especially since they teased feathers on Dromaeosaurus albertensis before returning to scaly maniraptors (i.e. the Troodon formosus). Plus their Gorgosaurus libratus was just atrocious.

    Regardless, most of these complaints are small. The writing flubs were probably the worst offenders. Short of that, the show was well put together. Though the show still fell a little more in the pro-warm-blooded camp for dino metabolism, it was the first and only time I have ever heard a documentary point out that warm-blooded and cold-blooded are opposite ends of a continuum. In fact one of the better writing moments occurred towards the end when the narrator stated:

    Dinosaurs likely had their own unique solution to the body temperature problem, which allowed them to survive for millions of years in the toughest seasonal conditions their world had to offer.

    It was nice to see a documentary that actually took a more objective stance on the whole thermophysiological debate.

    Finally another big plus for this show was the sheer number of paleontologists that rarely seem to make it in front of the camera, including Hans-Dieter Sues and Anusuya Chinsamy-Turan (the latter of whom while being a great scientist, has one of the harder to pronounce names in paleontology).

    Overall, this was another fine piece of work from the folks over at NOVA. Though there was a tendency to stray into the realm of hyperbole with the narration, and the CG work is somewhat painful to watch, the show proved informative and interesting.

    In the end, that’s really all a documentary should strive for.

    ~Jura


  • The return of fruit eating crocodylians.

    Back in 2002, a short paper came out that commented on the observation that captive caimans would eat fruit left in their cage. When I initially read the paper, I found it interesting. In the end, though, I assumed this to just be a fairly anomalous incident.

    Now Darren Naish of Tet Zoo has followed up on this story with further evidence of frugivory in crocodylians.

    As one can see, this observation has been filmed at least once.

    So does this mean that crocodylians are not as completely carnivorous as once thought? It’s hard to say. All observations made so far have been from alligatorids (alligators and caimans). This might be an apomorphic trait to this group. Only more observations will say for sure.

    Another option that Darren pointed out, is that this was a learned trait of these captive animals. In each case, observed animals were found to be sharing their enclosures with herbivorous animals (usually tortoises). This type of operant learning is rather rare, and would be amazing if found to be true.

    However, as evidenced by the comments of St. Augustine Alligator Farm park director, John Brueggen, fruit eating has been observed in wild animals too; so this is not simply a case of bored captives.

    Whatever the case, these observations do illustrate just how adaptaptable crocodylians are as a group.

    ~Jura


  • WordPress automatic upgrade.

    While having the ability to manually mess around with any aspect of the blog is a cool feature, one downside to having the manual version of WordPress is that upgrading becomes a bit of a chore. Usually by the time I get around to upgrading, there is a new version of WordPress available by the time I am done.

    So I deal with the frustrating nag in the admin page, urging me to upgrade.

    Well, I need not worry about this anymore. Jeff Bakalar of CNET has given a thorough video tutorial of a neat WordPress plugin called WordPress automatic upgrade.



    The plugin goes through all the tedious steps required to upgrade to the latest version of WordPress. While there are a lot of task screens that must be clicked through, the whole process still goes by substantially faster than before. If you have the manual version of WordPress, I highly recommended WordPress automatic upgrade.

    No more tedium, and no more nags.

    ~Jura


  • JFC lockjaw

    I can’t help but laugh at the process by which things become popular in society. One can write various well thought out posts, or web pages that are heavily referenced, and rarely receive a response.

    Shoot from the hip and/or spout out a controversial opinion, though, and all of a sudden the traffic starts to spike.

    Hence why sites like badastronomy.com took years to get a devoted following, while LOL cats skyrocket to the top of the charts within days.

    Case in point with History Channel’s recent crockumentary: Jurassic Fight Club.

    I wrote a piece describing my thoughts on this terrible show. In it I explained exactly what was wrong with the series, and precisely what my gripe was with its main contributor: “Dinosaur George” Blasing.

    That’s all fine and good. Time passes and we all move on. Then, I discover that History Channel actually has allowed folks to watch this show online, and one day out of boredom, I decide to see if the show might have gotten any better. Seeing that the quality has continued to slide downhill, I officially give the show up for dead, but not before ripping into it one more time. This time, I get to the heart of the matter, and don’t bother being even handed.

    The result? A spike in traffic and the appearance of some George Blasing apologists.

    Ah, how funny the internet can be.

    Adding to said hilarity, I was recently informed of the fact that old “Dinosaur George” himself had been to my site, and had commented on it in his blog. Apparently I had touched a nerve, so now his fans feel the need to protect their favourite figurehead.

    That’s all fine and good. I don’t much care. As I had stated before, as far as I’m concerned JFC is just more “documentary” sewage being pushed out by Discovery Channel A&E and its subsidiaries.

    Still, I can’t help but notice a theme with some of these apologists. A theme that I can blame on old “Dinosaur George” himself. Apparently everyone thinks that I have issues with Mr. Blasing, because he is not an accredited academic.

    Or as George Blasing put it: “There is a very, VERY small group of people within the paleontology community who feel that their science should be treated like a private club, where no one outside of their tiny group of likeminded buddies can participate.”

    I’m afraid Mr. Blasing, and his fans have missed the point of my contention completely. My issue with “Dinosaur George” has little to do with his lack of formal training. True, I think that his lack of any real training in this field, poses a detriment to him, but as I wrote earlier, there is nothing wrong with being an amateur, or just a big dinosaur fan. Most new dinosaur finds come from amateurs, and not professionals. Furthermore, a doctorate, while important, does not necessarily make one qualified for a particular task. Look at “creation scientist” Dr. Duane Gish, or radio personality Dr. Laura Schlessinger. One can be an official academic and still be a Fruit Loop shy of a full bowl.

    No, qualifications are not what bug me about Mr. Blasing. It’s the fact that he presents himself as being equivalent to the scientists he interviews. “Dinosaur George” is masquerading around as an authority figure on these matters. He bills himself on the show as a “Paleontology Expert.” So for those people who don’t bother looking into exactly what that means, “Dinosaur George” comes off as an authority on par with Dr. Thomas Holtz, or Dr. Larry Witmer.

    So when Mr. Blasing spouts off something patently wrong like “dromaeosaurs could breathe through their bones,” or “megalodon was the size of a jumbo jet,” the audience at home will come away accepting that as a fact. Mind you, this is not me complaining about “Dinosaur George” taking a matter of fact stand on one particular theory. Mr. Blasing has repeatedly made glaring mistakes on specific facts about animals. Saying that “megalodon” was the size of a 747 is just plain wrong. Jumbo jets are substantially longer than 50ft (more like 240ft), and a heck of a lot heavier.

    Another one I heard about recently was from that same “megalodon” episode. Apparently it was stated that “megalodon” could “taste” the water around it, because of taste buds in its skin called denticles. Once again, this is flat out wrong. It doesn’t take much effort to learn that denticles are sharp outgrowths of the dermis in shark skin. The result feels like teeth, or sandpaper. It makes the shark’s skin rough. It does not allow them to taste the water with their bodies. However, because “Dinosaur George” said it, his followers will take it as fact (as evidenced by some of the commenters in the previous post).

    To reiterate; my problem with Mr. Blasing is that he is impersonating a professional in the field, and in the process, he is misleading the public when he talks so matter of factly about some of his subjects.

    It is unfortunate. I explained all of this previously in my first post on JFC. Judging from the date of “Dinosaur George’s” blog post, it was apparent that this was the one he had read. Rather than deal with the impersonation and rampant speculation part of the show, Mr. Blasing instead wound up focusing on my pointing out his lack of credentials.

    Still, things aren’t all bad with “Dinosaur George.” While reading his behind the scenes blog, I was happy to see one good thing about the show:

    I was very careful not to put any of our experts into situations where they were made to look like they supported a theory that I knew they were opposed to. I made sure that I took on the role of speculating how the fights could have occurred, because they were based solely on modern animal behaviors and not any real fossil evidence. Since most of our experts owe their careers to the scientific community, they have the deal with their peers and those that they answer to. So to insulate them from being attacked by those within their industry, I made sure to keep them out of the fight scenes and instead used them to support the factually based stuff earlier on in the show.

    At least “Dinosaur George” was willing to do this. So JFC is at least one step better than Animal Face-Off was.

    Still, when all is said and done, I stand by my initial claim. “Dinosaur George” still comes off as a fanboy. That JFC turned out to be his pet project, does little to alleviate this thought. Rather than use his funds to talk about how these animals may have lived, or how we know what we know about prehistoric life, he used his funds to make a series of films devoted to prehistoric cage matches. As if the only time animals are interesting is when they are fighting each other. Each show boiled down to which animals is better.

    To me that sounds an awful lot like being a fanboy.

    ~ Jura


  • Dinosaur George can bite me!

    Okay, I know all I am doing is fueling the perpetuation of this kind of crap on TV.

    That said, I was bored, and one of the few cool things about The History Channel is that it allows folks to watch their shows online.

    The latest one was called: Bloodiest Battle; the story of the Cleveland Lloyd Quarry.

    Well, the JFC version of what happens.

    Anyway, there were, as usual, a host of annoying offenses in the show. Besides the ever annoying “loud dinosaurs” (i.e. all the dinosaurs couldn’t stop roaring), there was also the requisite rampant speculation on the social life of Allosaurus, the ecological relationship between Allosaurus and Ceratosaurus, and various anatomical flubs that continue to send out the message that The History Channel only hires the “talking heads” so they can appear scientifically legitimate.

    Anyway, the only reason I am bringing this one up is because the most egregious error in the entire program (in my mind, at least) was the absolute statement from “Dinosaur George” Blasing that “all the evidence points to these animals being warm-blooded.”

    That is bull-shit with a capital B.

    Er…Bull-Shit.

    There is no, I reiterate NO consensus on the thermophysiology of dinosaurs. That is true for all dinosaurs. All the evidence used so far has been ambiguous at best.

    Furthermore, a “cold-blooded” Allosaurus is going to have the same overheating problem as a “warm-blooded” Allosaurus.

    The problem has nothing to do with thermophysiology. It has to do with big animals over-exerting themselves in a hot environment. Dinosaurs were reptiles, and like all reptiles, they had a very limited means of removing heat. No sweat glands, and no real bare skin.

    One thing that Allosaurus and other saurischian dinosaurs may have used to keep cool is their air sac system. Air sacs in birds do not lead to their high aerobic capacity. That is accomplished through the flow through system that the air sacs created, where oxygen is sent only one way (vs. the dead end bellows way that mammals and reptiles use). The perfusion of extra air sacs all over the body does nothing to add to endurance in birds. What it does do, though, is lighten the body and provide a spot for heat to dump from deep in the body. It is honestly quite likely that this is was the main impetus for air sac evolution in dinosaurs, and its consequent exploitation by their avian descendants.

    This explanation would certainly have been a more scientific answer to how Allosaurus kept cool instead of pulling that antorbital fenestra radiator idea out of wherever “Dinosaur George” found it.

    I don’t like absolutism in science programs anyway, but this type of absolutism is what lead to the general public thinking, erroneously, that scientists have discovered dinosaurs to have been warm-blooded. All this winds up doing is creating a false concept of dinosaurs that winds up getting shot down when new students enter the field and find that dinosaurs weren’t the super hot-blooded beasts they thought they were.

    Plus, it’s just annoying when some fanboy says that being “warm-blooded” is one of the fundamental differences between dinosaurs and other reptiles.

    Okay, I’m done venting.

    Next episode involves some mythical beast called a “megalodon” (they must mean Carcharocles/Carcharodon megalodon). I hear that, at 15 meters (50ft) in length, it was the size of a jumbo jet and had to eat a tonne of meat a day to keep going.

    Yeah, definitely sounds like something worth missing!

    Still outgassing

    ~Jura


  • Jurassic (Bites) Club


    Tyrannosaurus rex vs. Nanotyrannus lancensis

    A few weeks ago the History Channel aired their first in a twelve part series on prehistoric creatures.

    Now, being the History Channel – a subsidiary of Discovery Channel A&E Networks – one would expect this series to detail some aspect of prehistoric life. Well that it does…sort of.

    The series is called: Jurassic Fight Club. Many of you have probably already watched the first three, or four episodes, but for the uninitiated the premise is as follows:

    Imagine all 4.6 billion years of prehistory as being one planet wide cage match somewhat akin to Primal Rage. Each week two animals (usually dinosaurs, but there are the occasional mammals) are pitted against one another.

    Each hour long show is supposedly based off of a real fossil site. For instance the first episode was about a Majungasaurus skeleton that was found with bite marks of another Majungasaurus (erroneously referred to as “Majungatholus” despite paleo-consultant disapproval). One of the recent ones involved the infamous Tenontosaurus tilletti / Deinonychus antirrhopus fossils (a find with one large, dead T.tilletti and a few dead D.antirrhopus nearby. One of the first bits of evidence in favour of pack hunting behaviour in some theropods).

    The show sets the “battle premise” and then seeks to justify its reasoning by cutting to various paleontologists for their take. The paleo crew is fairly diverse and include: Dr. Thomas Holtz Jr. Dr. Larry Witmer and Dr. Phillip J. Currie.

    Okay, so maybe all that doesn’t sound so bad to some of you, but what may seem okay in theory has turned into an utter failure in execution.

    Let me state up front that I immediately left this series for suck back when I first heard the title. It sounded like just another useless “documentary” that is little more than an excuse to watch two CG animals fight each other in order to satisfy some sophomoric need to watch things fight.

    Still, there were proponents of the series (namely the paleo folks that worked on it) that urged the most skeptical of us to give the show a shot. As such, I refrained from commenting on it until now.

    Four episodes in and now even the scientists who helped on it are starting to back away.

    Honestly who could blame them. The show uses minimal information from the actual scientists. The shot of Dr. Witmer comparing theropod maxillae is continuously reused, and I could swear the show spends more time on the non-professional guys than they do the actual scientists.

    This is a problem because it is the non-professional crowd (one fellow in particular) who really bring the show down.

    The show features the likeness of one Dinosaur George Blasing. A quick perusal of his qualifications finds him to be little more than a particularly successful dinosaur fanboy. He apparently makes his living by talking about how cool dinosaurs are, to elementary school children. In effect, he is little different from Dinosaur Don Lessem, who writes books about dinosaurs for children.

    Now don’t get me wrong. There’s nothing wrong with being an amateur, or a big, but non-professional, dinosaur fan. The problem I have is with History Channel essentially letting the fanboys run the show. This is supposed to be an educational program. History Channel is supposed to be the repository for all things historical. As such, it should be held to a higher standard than, say ABC, or Fox. Yet, here we get to witness the production of another terrible program that only seeks to snatch eyeballs. It offers practically no educational value.

    Frankly that just ticks me off. Jurassic Fight Club is about as terrible as Animal Face Off was (another Discovery Channel property that not only embarrassed the subject matter, but also the scientists involved with it, by forcing them to give trash talk to one another).

    The question that shows like JFC leave me asking is: what audience is it meant for? By seeking out professional paleontologists for their input, one would assume that the makers were looking for scientific accuracy. This, in turn, suggests that the goal is to pass knowledge on to their viewers. Yet, if one can slog through the first episode they will find themselves assaulted with absolutes left and right, tonnes of MTV style quick takes and replays, and a metric tonne of speculation. Each episode ends with Dinosaur George giving “his take” on how the whole story unfolded (complete with the CG animation). Now this sounds like nothing more than Godzilla style popcorn entertainment.

    So which is it? Is JFC trying to be a documentary, or a popcorn flick?

    By trying to do double duty, it comes off as more of mockumentary. A documentary that seeks to mock the subject material in which it presents. When done right, mockumentaries can be great (e.g. This is Spinal Tap), but in cases like this, where the parody does not appear intentional, the result is more of a slap in the face to those of us who do work in the field. To ask for professional advice and then completely ignore it, is a huge insult to both professions. The History Channel people should know better.

    One question that is left from all this is: must we sacrifice scientific accuracy for entertainment, in order to get the knowledge across to the viewers?

    As one person had mentioned on another forum: if scientists were to get the documentary that they wanted, no one would watch it.

    Pardon me if I decide to call bullshit on this one. If one wants to see a documentary that is designed in a way respectful of the subject matter, one need only look at PBS’s NOVA series. Rarely does NOVA falter in their presentation style. Because of this consistent high quality the series tends to be lauded by many in the fields of science.

    Okay, so maybe NOVA is a fluke. Besides, it’s on PBS and we all know how small and concentrated the PBS demographic tends to be. Are there any other examples?

    Plenty.


    David Attenborough – King of great documentaries

    If one really wants to see how to make a series of successful and scientifically sound documentaries, one need only to look over to the UK, and the BBC. In the realm of documentaries, the David Attenborough docs reside in the upper echelon of quality. Not only are Attenborough’s documentaries well done, and accurate, but they are also popular. Planet Earth, one of the latest Attenborough docs, was the most watched cable show of all time. Discovery Channel pulled in 100 million viewers when it first aired in the United States. That is huge for a major network, much less a cable network (Discovery’s average prime time ratings are around 5 million viewers).

    So not only does a scientifically sound documentary bring in the audience, but it can bring them in droves. When BBC released “Life in Cold Blood,” it was an event in England, bringing in more viewers that the average drama.

    If we head back to the states, we can look at an old staple of children growing up in the 1990s; Bill Nye the Science Guy was a show that garnered a large and devoted fan following. Bill Nye was not only a great presenter and funny comedian, but he was/is also a real scientist. Though the show did its best to avoid using large words (for its young demographic), the show repeatedly and successfully showed off how awesome science was and how amazing the real world is.


    Bill Nye – Champion of science education

    You know why I think these shows did as well as they did? Because they didn’t dumb stuff down. There was no push to show the flashy stuff in order to maintain audience attention (equivalent to showing something shiny to distract a cat). The BBC documentaries, Bill Nye and NOVA all respected the intelligence of their audience, and the audience reciprocated by showing up in droves. People from all walks of life enjoy a good challenge. Today’s current documentarians would benefit from remembering this.

    So for all those scientists who are asked to participate in the next big Sci Fi/Discovery Channel/ABC show/ whatever documentary; I say don’t fear speaking your mind on the importance of keeping the science up to snuff. If the filmmakers start bitching about having to “keep things simple” or removing the science for the sake of “the story,” just tell them:

    That’s not how David Attenborough would do it.

    ~ Jura – who will probably never get a consulting job on one of these shows.


  • If a virus can get sick, is it alive?




    Photo from Nature.com

    A new paper in Nature has discovered that at least one known virus strain can get sick.

    The virus in question has been dubbed: mamavirus. The name stems from the giant size of the virus. Mamavirus is bigger than some of the smallest bacteria, with more than 900 genes. The neat thing, though, was not so much its large size, but the presence of a smaller “satellite” virus deemed Sputnik. Under “normal” circumstances when a mamavirus infects a cell it uses the proteins its genes encode, to hijack the cell’s metabolism and thus create more viruses. When Sputnik is around, though, the rules change. Sputnik hijacks the hijacked machinery, resulting in malformed versions of the mamavirus.

    In human world terms, Sputnik gets mamavirus sick. Sputnik is, thus, the first example of a virophage – a virus that infects other viruses.

    All in all a fascinating find; but what of the broader implications of the article. If mamavirus can get sick, then does it qualify for life?

    There are, or used to be (more on that later) five criteria for life. They were:

    1. Movement (internal, and/or external)
    2. Reproduction
    3. Growth
    4. Metabolism
    5. Adaptation

    In order to be alive, a candidate must satisfy all five criteria. So plants, animals, fungi, protists and bacteria all passed with flying colours. Rocks fail, as they neither metabolize, adapt, or reproduce (they can grow and do evolve though).

    Biochemists in the crowd might point to prions. They do reproduce, but they don’t grow, adapt (resist, but not adapt), metabolize or do anything else like life. For the most part, prions are just malformed proteins. They reproduce by infecting nearby proteins; a case more similar to limb rot, free radicals, or erosion than true reproduction.

    Viruses, on the other hand, get real close. They reproduce, grow, move and adapt. The one thing that they don’t do, is metabolize. In order to metabolize, a virus must steal the metabolic “machinery” of another living organism. Because viruses lack this fundamental requisite, many biologists and biology textbooks place them just outside of life.

    Think about this though. A virus acts just like other living things. It just needs a little help to do some parts. Viruses are not self sufficient, but that shouldn’t relegate them from the status of alive. There are lots of animals today that must steal the resources of others in order to survive. We call them parasites. One of the evolutionary hallmarks of parasitism is a streamlined genome. Depending on the degree of parasitism going on, a parasite could remove limbs, sensory organs, digestive processes, and even some reproductive material. In effect, a highly evolved parasite can easily be mistaken for a primitive relic.




    Tapeworms: primitive, or advanced?

    So too with viruses. What if they were cells that reduced their extraneous evolutionary baggage so much that they now fall outside of the traditional criteria for life? There is currently no way of knowing if this is true, but at the very least it would seem that viruses should warrant an honourary placement within the realm of life.

    The argument oscillates back and forth between life and non-life. This is good as it forces us to look harder at the criteria for life.

    However, there is another group out there that tends to poo poo all this semantic talk. They are the same group that thinks the arguments over Pluto’s status as a planet are useless (because they think the concept of planet is useless), or that species are a pointless arbitration. In this case the argument is that the criteria for life are all arbitrarily chosen. That life is a continuum from non-living to living, with no real demarcation, and thus no real value in being defined.

    I disagree wholeheartedly. There is an obvious turning point between what is alive and what is not. If viruses are skating the edge of this line then all the better for us. Defining what constitutes life is extremely important. If we don’t know where this line lies, then we are unable to determine what makes something alive to begin with. What is it about a cell that is so unique compared to a small rock? What is so special about this particular chemical makeup?

    From a deep philosophical view, the definition of life would seem all the more important. If one wants to find out what makes humans unique, then it would help to know what it is that determines their life in the first place. For bioengineers, knowing the criteria for life, gives one a chance to actually create life. Abiogenesis scientists (those who study the origin of life) would be lost without some kind of definition for what it means to be alive.

    I just don’t understand how some scientists, of all people, can make these arguments about the uselessness of arbitrary definitions. How do they expect people to talk about these things if there is no way to name, or categorize them? Conceptual terms might come with baggage, but the instant definitions and criteria that they come with, more than make up for it.

    Take the planet example. If two astronomers were talking about finding some new planet, I would immediately be thinking of a massive celestial body orbiting a star, and being large enough to be round. If, on the other hand, they were talking about finding some new dwarf planet, then I would imagine a smaller object that may, or may not be completely round and is probably not orbiting a star (at least not very close). Having a definition in place already, removes the necessity of figuring out how big, or how erratic the orbit will be. If the goal is to look for life, I can probably skip the dwarf planets and focus on the real planets.




    From: Mike Keefe’s Denver Post comic

    If we removed the term planet altogether, then what would astronomers talk about finding? They found an object. How big is it? What kind of orbit does it have? Is there an atmosphere, or a star? Many of these questions can be answered quicker by having the definitions that we currently have.

    All the more reason why this urge to purge useful arbitrary definitions from the scientific lexicon, is disturbing. I would like to know what proponents of these ideas suggest we use in place of these names. To date I have heard no alternative brought forth.

    ~Jura


  • Randy Pausch 1960 – 2008


    Randy Pausch photo from the site of his colleague Dr. Gabriel Robins

    The double edged sword of heroism is that, while it is an honourable trait to have, one of its hard prerequisites tends to be death.

    Randy Pausch, Carnegie Mellon Professor, and author of the most inspiring lecture of all time has succumbed to pancreatic cancer.

    Dr. Pausch, and all those who followed him, knew that this day would come. Though many had hoped it would be much further in the future, the outcome was no less inevitable. While it is sad to see him slough this mortal coil, it is more important to remember how he lived and the lessons that he taught us along the way. Dr. Pausch may be gone, but he has left his mark in history, and shown us all the importance of living a good life, and following our passions.

    “…we don’t beat the Reaper by living longer. We beat the Reaper by living well.” – Randy Pausch

    For those who haven’t yet seen his work, I recommend seeing his final lecture; either in its short form, or the original, longer version.

    R.I.P. Dr. Pausch

    ~ Jura