seeing an aquatic pleurodire run much faster than a tortoise,
There are pachyostotic amniotes, as many said above, that were correlated with aquatic habitats. However, I have seen cetacean and pinniped skulls and they are relatively trabecular and appear to be less ossified, instead of more, than those of terrestrial mammals.
almacenating
As far as I know, many salamanders are bottom-dwellers in rivers and are not pachyostotic, and I do not think all of them are lungless...
Out of curiosity, are there any names for a clade that includes lepidosaurs and testudines, but not archosaurs?