Reptilian Rants

25 July, 2008

Randy Pausch 1960 - 2008

Filed under: Uncategorized — Jura @ 13:30




Randy Pausch photo from the site of his colleague Dr. Gabriel Robins

The double edged sword of heroism is that, while it is an honourable trait to have, one of its hard prerequisites tends to be death.

Randy Pausch, Carnegie Mellon Professor, and authour of the most inspiring lecture of all time has succumbed to pancreatic cancer.

Dr. Pausch, and all those who followed him, knew that this day would come. Though many had hoped it would be much further in the future, the outcome was no less inevitable. While it is sad to see him slough this mortal coil, it is more important to remember how he lived and the lessons that he taught us along the way. Dr. Pausch may be gone, but he has left his mark in history, and shown us all the importance of living a good life, and following our passions.

“…we don’t beat the Reaper by living longer. We beat the Reaper by living well.” - Randy Pausch

For those who haven’t yet seen his work, I recommend seeing his final lecture; either in its short form, or the original, longer version.

R.I.P. Dr. Pausch

~ Jura

20 July, 2008

Leopard takes out crocodile

Filed under: Uncategorized — Jura @ 20:04

The Telegraph had a report today on a unique event in Africa. Hal Brindley, an American Wildlife photographer, happened to be in the right place in the right time for this to happen. The shots come from Kruger national park.


Photo taken by Hal Brindley and destributed by Solo Syndication

Photo taken by Hal Brindley and destributed by Solo Syndication

The photos show a leopard (Panther pardus) taking out a Nile crocodile (Crocodylus niloticus). The croc is smaller than the leopard, but the results are no less shocking.

Leopards, and most big cats in general, don’t go after crocodiles as a normal routine. Not only do the felines run the risk of becoming the hunted, but even if they do win (like this leopard did), there is really not a lot of meat to go around. Much of it is locked away by the bony osteoderms.

The only time I have seen a leopard take out a crocodile, was in a case where both animals were slowly starving and dehydrating. The crocodile died first, and the leopard took advantage of the free meal.

As one can see in the photo, this leopard wasn’t exactly starving, so it is hard to imagine desperation being the cause of this attack. The article also mentioned that the leopard attacked the croc on its own turf. Both situations are very unique, and make the fact that the leopard won, all the more amazing.

There was no run time given for the battle, so I’m not sure how long it lasted. Judging from some of the shots though, it must have been intense.

Nature is just full of surprises.

~Jura

19 July, 2008

Dr. Horrible comes to a horrible end.

Filed under: Uncategorized — Jura @ 0:58




Oh hey look. An image that didn’t get its formatting messed up by Wordpress.

So to speak. If you haven’t seen all 3 acts yet, make sure to head on over to the official site and watch them. They’ll only be there until July 20th. After that, they will be pulled off the (non-bittorrent) net, for work into a DVD.

Overall I had a positive experience with Dr. Horrible’s sing along blog. The songs were catchy and the story was on par with something from The Tick. The final act does take a hard downswing into the realm of drama. This is rather typical for a Joss Whedon series. If one was a fan of Buffy, Angel, or Firefly, then this wont’ be too surprising. Unfortunately the short runtime of the show made the dramatic shift a jarring one.

Early reviews seem to be polarized. Some people liked it, while others felt Joss dropped the ball. Personally I enjoyed it. I like these types of endings more than the more typical “Disney” endings that permeate our current pop culture. I wish that the acts were a little longer though.

Some favourite moments from the show include Captain Hammer explaining “the hammer.”

Dr. Horrible getting all megalomaniacal before signing off from his webcam in act II, only to sign on a second later after finding out who some of his audience members are.

The sneak peak of the league of evil, including the reveal of bad horse (very reminiscent of The Tick).

All the actors did a fantastic job with their roles. It’s always a blast to see the actual actors doing the singing. I did feel that Felicia “The Guild” Day, was underutilized in the show. For the most part, she just played the girl in the middle. It would have been nice if her part was a bit more fleshed out.

Still, I’m sure that most of these folks got to add one more talent to their resumes.

Bonus win points to Joss for included former Buffy writers: Marti Noxon and David Fury (whose last onscreen singing was the Buffy musical).

In the end, it was a neat story. I’ll be curious to see where Whedon and his crew take it from here.

Till then, watch the show if you haven’t. If you have, then go watch it again. Let’s all crash Joss’s servers one last time.

~Jura

17 July, 2008

Crocodiles and turtles are not reptiles? CNAH thinks so.

Filed under: Uncategorized — Jura @ 17:57

For all those playing the home game, here is the story thus far:

Reptilia, the group, was created back in the early days of taxonomy. Its coiner, Carolus Linneaus (upon whom we get the dominant form of classification today), created the group to house all the critters that were neither mammalian, nor avian. Reptilia was originally a wastebin that housed all extant reptiles, as well as spiders and sharks.

Over the decades, classification schemes became more refined and the definition of Reptilia became more restricted until it eventually resulted in the definition we have today. Namely that group that incorporates snakes, lizards, turtles, crocodylians, and tuataras. A group defined (or once defined depending on ones systematic leanings) as a collection of animals all sharing epidermal scales, being bradymetabolic (or more erroneously, ectothermic), and sharing a series of skeletal affinities such as a small, or absent tabular, a large post-temporal fenestra, a suborbital foramen and a supraoccipital plate that is narrow.

This definition worked and served herpetologists and paleontologists well for decades. Then in the 70’s a new classification scheme came along. Deemed cladistics, it focused less on shared characteristics and more on shared, derived characters.

For example: Humans have hair and five fingers. The five fingers are a shared character with all other tetrapods (terrestrial vertebrates and their secondarily aquatic descendants). Meanwhile the hair is a shared, derived character with mammals.

Obviously the terms shared and shared derived (or plesiomorphy and synapomorphy, in the technical sense) are going to depend on one’s frame of reference. For instance if one was going to look for a synapamorphic trait for humans compared to rats, then hair wouldn’t work. Fingernails and tailessness would. Compare humans to other apes and now these last two characters don’t work either, so one must look for something else.

So on and so on.

Cladistics had a rocky start, but was eventually accepted as the main means of determining evolutionary relationships. Though there are still a few staunch detractors, the overall view on cladistics is that it is the most true way of expressing evolution.

Since cladistics groups creatures by their shared derived characters, once one is on a branch of the cladistic tree, one stays there. Creatures can split from this branch, but they will always be retained.

See the following figure for an example:



Note how even though sharks, crocodiles and rabbits have all split from the vertebrate branch, they are still retained on it.  Since branches can infinitely split, there is no trouble with showing evolutionary relationships this way. It creates a view of evolution as a very thick bush; which is a fairly accurate representation of the results of this process.

In terms of phylogenetics, this is just fine.  Cladistics kicks butt.

Unfortunately, some ardent supporters of cladistics thought that this method might work well in terms of classification.

Now some of you might be shaking your head right now thinking that phylogeny and classification are the same thing. They are not.

Classification is the act of categorization. It is an arbitrary way for humans to order what they see in the world around them. We classify everything!

Cars are broken down into their manufacturer and their model. That’s classification.

Clothing is broken down into seasons, body type and general design. Once again, classification.

Google breaks search results into web, images, shopping, scholarly texts, etc. That is classification.

Now there are those liberal arts types out there that like to think that classification only limits our perceptions and creates unwanted stereotypes. While this is partly true, the alternative is a world without order. If our brains worked differently this might be fine, but our current neurological makeup is such that a chaotic hodgepodge of things without names and categories, only results in confusion.

Like it or not, we will always need to classify things. The trick is not to let the classification completely colour our perceptions.

Coming back on track, certain systematists felt that the all inclusive nature of cladistics would work well with classification. So new rules were implemented. From now on a group could no longer be defined by its characters. Rather, its definition would now be dependent on a completely arbitrary association of members.

For instance snakes are no longer classified based off of being limbless, and lacking both temporal bars among other things. Instead they are now defined as being the group that contains all members that evolved between boas and blindsnakes. To put it in a more exaggerated sense: boas are snakes because snakes include boas. This classification is completely circular and meaningless.

However it is also stable. 20 years from now, the definition of snake will remain the same. For some systematists the stability of the name outweighs its lack of substance.

Another rule enacted was that only groups that contain an ancestor and all its descendants would be considered a “natural” or “real group.”

On the outset this might not seem a problem. Humans are hominids. Hominidae includes us and a few other apes. No big deal. Birds, as neornithines, include every single bird you see flying around today. Again no problem.

But what about larger groups. Especially groups like Reptilia, that were originally believed to have given rise to numerous other groups (birds and mammals). What of Osteichthys, the group that gave rise to every land vertebrate today.

Starting to see the problem yet?

The old definition of Reptilia no longer held up. Reptiles excluded one of their descendants; the birds. This made Reptilia paraphyletic (ancestor and some of its descendants). In order to “fix” this alleged problem, birds would need to be incorporated into the meaning. The result: birds are now reptiles.

Well, in some circles.

This kind of all inclusive naming scheme has been met with intense resistance. So much so, in fact, that 30 years after its inception, dinosaur paleontology seems to be the only branch of biology that actually follows these rules. Every other field seems perfectly content with paraphyletic groups.

And hey, why not? Paraphyly makes perfect sense in terms of classification. It is much easier to grasp the concept that whales evolved from cows, rather than calling whales cows.

Alas this battle appears to be far from over. For whatever reason, Reptilia seems to be at the heart of the argument. Many herpetologists, ornithologists and paleontologists are perfectly happy with leaving birds out of reptiles. Other paleontologists are not, and continue to do away with the old definition. Some have even gone so far as to try and remove Reptilia altogether from classification.

So back and forth it goes. This continuous arguing has made things a little confusing for students of evolutionary theory. When it comes to classification the bickering between both sides can be enough to turn students away, or at least give them a headache.

So the Center for North American Herpetology decided to take matters into their own hands and reclassified Reptilia all on their own.

Idealistic to be sure (I like the idea of a crocodylian and chelonian class), but controversial. CNAH decided that the most accepted version of reptile is one that doesn’t include either turtles or crocodiles.

What the hell were they thinking?

Needless to say, I doubt that this will catch on.

~Jura

15 July, 2008

Dr. Horrible Act I

Filed under: Uncategorized — Jura @ 18:51

The first act was released today. Everyone make sure to watch it. Sadly it can’t be embedded.

Dr. Horrible: Act I

Win moment: The “Bad Horse” song.

~Jura

4 July, 2008

Whedon FTW!

Filed under: Uncategorized — Jura @ 21:18


As most web savvy “web 2.0″ folks out there, I’m a huge fan of Joss Whedon.

The man gave us the incredible Buffy the Vampire Slayer series, as well as the equally impressive Angel, and the short lived (but well loved) series: Firefly.

Joss Whedon also has a hefty comic book following, with season 8 of Buffy, and the “spin off” series: Fray.

Now he gives us: Dr. Horrible.

It’s a musical…about a supervillain.

I mean, really, talk about left field…

Currently there is only a trailer up through vimeo, but the mini-series is set to air on July 15th.

As a card carrying geek and Whedonphile, I am doing my duty and passing the word on to all other Joss Whedon fans.



Dollhouse is still a few months away. Till then, let’s help Joss stick it to the man (of course, he sort of is the man, but no matter), and support Dr. Horrible.

~Jura

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